Agenda // Eck Institute for Global Health // University of Notre Dame

Eck Institute for Global Health

Agenda

June 7 - Wednesday Afternoon 12:30 pm - 4:30 pm

Registration 11:30 - 12:30 pm - McKenna Hall

Arthropod Bioinformatics Workshop

Presenters (in alphabetical order):

Anthony Bretaudeau (AphidBase), Chris Childers (i5k Workspace@NAL), Chris Elsik (Hymenoptera Genome Database), Gloria Giraldo-Calderon (VectorBase), Sujai Kumar (LepBase), Alistair Miles (Panoptes; Ag1000G), Monica Munoz-Torres (Apollo, GO, i5k), Monica Poelchau (Apollo GO, i5k), Monica Poelchau (i5k Workspace@NAL), Robert Waterhouse (OrthoDB, BUSCO, i5k).

Topics include:

- Structural and functional genome curation

- Workspaces, including Galaxy

- Overview of specific informatics resources such as: Apollo, AskOmics, Ensembl browsers, HymenopteraMine, i5k Workspace@NAL, OrthoDB & BUSCO, and VectorBase

Break - 2:30 pm

June 8 - Thursday

Morning 8:30 am - 11:30 am

Hands on sessions

Track 1: Apollo: Genome Annotation Editor (intro lecture and hands on curation session)
Instructor: Monica Munoz-Torres. TAs: Chris Elsik and Rob Waterhouse

Track 2: VectorBase workshop, inc. PopBio
Instructor: Gloria Giraldo-Calderon

Track 3: Setting up your own genome hub - workshop (by Lepbase)
Instructor: Sujai Kumar

11:30 - 1:00 pm LUNCH

Afternoon 1:00 pm - 4:00 pm

Hands on sessions

Track 1: vector genomics
- Anopheles gambiae 1000 genomes project browser
Instructor: Alistair Miles
- VB part 2 
Instructor: Gloria Giraldo-Calderon

Track 2: genome annotation and curation
- Apollo: Apollo (intro lecture and hands on curation session). * Re-do of Thursday morning session.
Instructor: Monica Munoz-Torres. TAs: Chris Elsik and Rob Waterhouse
- OrthoDB and BUSCO (hands-on exercises)
Instructor: Rob Waterhouse

Track 3: exploring and analyzing genomes
- Askomics
Instructor: Anthony Bretaudeau
- i5k Workspace@NAL
Instructors: Monica Poelchau and Chris Childers
- HymenopteraMine
Instructor: Chris Elsik and Deepak Unni

4:00 pm Conclusion